Documents de référence

Année	Application	Intitulé
2012	Genome	EmaxDB: Avalibility of a first draft genome sequence for the apicomlexan Eimeria maxima www.ncbi.nlm.nih.gov/pubmed/22465442
2012	Metagenome	Candidatus Arthromitus' revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae www.ncbi.nlm.nih.gov/pubmed/22436008
2012	Transcriptome	Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness www.ncbi.nlm.nih.gov/pubmed/22402787
2012	Genome	Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus dx.doi.org/10.1016/j.fm.2012.02.001
2012	Transcriptome	An interspecies regulatory network inferred from simultaneous RNA-seq of Candida albicans invading innate immune cells www.ncbi.nlm.nih.gov/pubmed/22416242
2012	Genome	Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis www.ncbi.nlm.nih.gov/pubmed/22399573
2012	Genome	After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection www.ncbi.nlm.nih.gov/pubmed/22377718
2012	Genome	rplC T460C identified as a dominant mutation in linezolid resistant Mycobacterium tuberculosis strains www.ncbi.nlm.nih.gov/pubmed/22371899
2012	Genome	Whole-Genome Sequencing of Sodaria macrospora Mutants Identifies Developmental Genes www.ncbi.nlm.nih.gov/pubmed/22384404
2012	Metagenome	Similar diversity of Alphaproteobacteria and nitrogenase gene amplicons on two related Sphagnum mosses www.ncbi.nlm.nih.gov/pubmed/22294982
2012	Metagenome	The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates www.ncbi.nlm.nih.gov/pubmed/22258098
2012	Transcriptome	Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis www.ncbi.nlm.nih.gov/pubmed/22266655
2012	Genome	Multilocus sequence phylogenetic analysis of Avibacterium www.ncbi.nlm.nih.gov/pubmed/22241047
2012	Transcriptome	The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression www.ncbi.nlm.nih.gov/pubmed/22251276
2011	Genome	Role of bacteriophage SPP1 tail spike protein gp21 on host cell receptor binding and trigger of phage DNA ejection." in "Molecular Microbiology www.ncbi.nlm.nih.gov/pubmed/22171743
2011	Transcriptome	Assembly, Gene Annotation and Marker Development Using 454 Floral Transcriptome Sequences in Ziziphus Celata (Rhamnaceae), a Highly Endangered, Florida Endemic Plant www.ncbi.nlm.nih.gov/pubmed/22039173
2011	Transcriptome	Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia www.ncbi.nlm.nih.gov/pubmed/21965651
2011	Genome	Human Polyomavirus Related to African Green Monkey Lymphotropic Polyomavirus www.ncbi.nlm.nih.gov/pubmed/21801611
2011	Genome	Identification of the First Human Gyrovirus, a Virus Related to Chicken Anemia Virus www.ncbi.nlm.nih.gov/pubmed/21632766
2011	Genome	Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae www.ncbi.nlm.nih.gov/pubmed/21987820
2011	Genome	Physiological and Toxic Effects of Purine Intermediate 5-Amino-4-imidazolecarboxamide Ribonucleotide (AICAR) in Yeast www.ncbi.nlm.nih.gov/pubmed/21757731
2011	Genome	Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture www.ncbi.nlm.nih.gov/pubmed/21700661
2011	Genome	Complete Genome Sequences of Four Mammalian Isolates of Chlamydophila psittaci. www.ncbi.nlm.nih.gov/pubmed/21705611
2011	Genome	New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina www.ncbi.nlm.nih.gov/pubmed/21571878
2011	Genome	Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy www.ncbi.nlm.nih.gov/pubmed/21565804
2011	Transcriptome	Evolution of c4 photosynthesis in the genus flaveria: how many and which genes does it take to make c4? www.ncbi.nlm.nih.gov/pubmed/21705644
2011	Transcriptome	Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics www.ncbi.nlm.nih.gov/pubmed/21355971
2011	Transcriptome	Functional genomics of the initial phase of coldadaptation of Pseudomonas putida KT2440 www.ncbi.nlm.nih.gov/pubmed/21306427
2011	Transcriptome	Regulatory Mechanisms Underlying Oil Palm Fruit Mesocarp Maturation, Ripening, and Functional Specialization in Lipid and Carotenoid Metabolism www.ncbi.nlm.nih.gov/pubmed/21487046
2011	Targeted re-sequencing	Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection www.ncbi.nlm.nih.gov/pubmed/21403130
2011	Transcriptome	Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes. www.ncbi.nlm.nih.gov/pubmed/20829345
2011	Genome	The Genome of a European Fresh Vegetable Food Safety Outbreak Strain Salmonella enterica subsp. enterica serovar Weltevreden. www.ncbi.nlm.nih.gov/pubmed/21296964
2011	Metagenome	Pyrosequencing of Antibiotic-Contaminated River. Sediments Reveals High Levels of Resistance and Gene Transfer Elements www.ncbi.nlm.nih.gov/pubmed/21359229
2011	Genome	Molecular description and industrial potential of Tn6098-mediated conjugative transfer of alpha-galactosides metabolism in Lactococcus lactis. www.ncbi.nlm.nih.gov/pubmed/21115709
2011	Metagenome	Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. www.ncbi.nlm.nih.gov/pubmed/21257804
2011	Genome	Full length de novo sequence of the Chlamydophila psittaci type strain 6BC. www.ncbi.nlm.nih.gov/pubmed/21441521
2011	Genome	Complete Genome Sequence of Lactococcus lactis subsp. lactis KF147, a Plant-Associated Lactic Acid Bacterium. www.ncbi.nlm.nih.gov/pubmed/20348266
2010	Genome	The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites. www.ncbi.nlm.nih.gov/pubmed/20675499
2010	Transcriptome	Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. www.ncbi.nlm.nih.gov/pubmed/20233449
2010	Transcriptome	The Differential Evolutionary Dynamics of Avian Cytokine and TLR Gene Classes. www.ncbi.nlm.nih.gov/pubmed/20483729
2010	Targeted re-sequencing	Targeted resequencing of candidate genes using selector probes. www.ncbi.nlm.nih.gov/pubmed/21059679
2010	Genome	Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa. www.ncbi.nlm.nih.gov/pubmed/21147909
2010	Metagenome	Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. www.ncbi.nlm.nih.gov/pubmed/20393571
2010	Genome	Complete Genome Sequence of Cronobacter turicensis LMG 23827, a Food-Borne Pathogen Causing Deaths in Neonates. www.ncbi.nlm.nih.gov/pubmed/21037008
2010	Genome	A Two-Component Regulatory System Interconnects Resistance to Polymyxins, Aminoglycosides, Fluoroquinolones, and Beta-Lactams in Pseudomonas aeruginosa. www.ncbi.nlm.nih.gov/pubmed/21149619
2010	Genome	A multiresistance megaplasmid pLG1 bearing a hylEfm genomic island in hospital Enterococcus faecium isolates. www.ncbi.nlm.nih.gov/pubmed/20951641
2009	Metagenome	Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. www.ncbi.nlm.nih.gov/pubmed/19558424
2009	Regulome	Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. www.ncbi.nlm.nih.gov/pubmed/19465578
2009	Genome	Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris. www.ncbi.nlm.nih.gov/pubmed/19490607
2009	Genome	Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains. www.ncbi.nlm.nih.gov/pubmed/20023018
2009	Transcriptome	A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. www.ncbi.nlm.nih.gov/pubmed/20398411
2008	Genome	Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats. www.ncbi.nlm.nih.gov/pubmed/18976483