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Reference Papers

 

We’re proud to contribute, with our DNA and RNA sequencing services, to a huge number of exciting and cutting-edge scientific projects.


Thank you for trusting us more than 1500 times! Please find a small selection below.

 

Please note, that you can arrange them for your convenience ordered by year, application or field of interest.


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Year Application Title Fields of interest
2014 Targeted re-
sequencing
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma, Nature
www.nature.com/nature/journal/vaop/ncurrent/full/nature13379.html
Human
2014 Targeted re-
sequencing
Identification of Yeast and Human 5-Aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAr) Transporters,
The Journal of Biological Chemistry
www.ncbi.nlm.nih.gov/pubmed/
Plant & Animal,
Human
2014 Transcriptome An Avian Retrovirus Uses Canonical Expression and Processing Mechanisms To Generate Viral MicroRNA, J. Virol.
www.ncbi.nlm.nih.gov/pubmed/24155381
Microorganism
2014 Genome Whole Genome Sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: Potential impact on the inference of tuberculosis transmission, J Infect Dis
www.ncbi.nlm.nih.gov/pubmed/23945373
Microorganism
2014 Metagenome Importance of soil organic matter for the diversity of microorganisms involved in the degradation of organic pollutants, The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/24430482
Microorganism
2014 Targeted re-
sequencing
Tau exon 2 responsive elements deregulated in myotonic dystrophy type I are proximal to exon 2 and synergistically regulated by MBNL1 and MBNL2, Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
www.ncbi.nlm.nih.gov/pubmed/24440524
Human
2014 Targeted re-
sequencing
Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe, PLoS ONE
www.ncbi.nlm.nih.gov/pubmed/24465990
Human
2013 Targeted re-
sequencing
GRIN2A mutations in acquired epileptic aphasia and related childhood focal epilepsies and encephalopathies with speech and language dysfunction, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23933820
Human
2013 Targeted re-
sequencing
Establishment of totipotency does not depend on Oct4A, Nature Cell Biology
www.ncbi.nlm.nih.gov/pubmed/23934214
Human
2013 Genome The wheat powdery mildew genome shows the unique evolution of an obligate biotroph, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23852167
Plant & Animal
2013 Targeted re-
sequencing
Recurrent somatic alterations of FGFR1and NTRK2 in pilocytic astrocytoma, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23817572
Human
2013 Metagenome Evidence for successional development in Antarctic hypolithic bacterial communities, The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/23765099
Microorganism
2013 Metagenome Gut metagenome in European women with normal, impaired and diabetic glucose, Nature
www.ncbi.nlm.nih.gov/pubmed/23719380
Human
2013 Targeted re-
sequencing
Structure of the Legionella effector AnkX reveals the mechanism of phosphocholine transfer by the FIC domain, The EMBO Journal
www.ncbi.nlm.nih.gov/pubmed/23572077
Microorganism
2013 Targeted re-
sequencing
Expression of recombinant human complement C1q allows identification of the C1r/C1s-binding Sites, PNAS
www.ncbi.nlm.nih.gov/pubmed/23650384
Human
2013 Metagenome A Metagenomic Study Highlights Phylogenetic Proximity of Quorum-Quenching and Xenobiotic-Degrading Amidases of the AS-Family, PLoS
www.ncbi.nlm.nih.gov/pubmed/23762380
Microorganism
2013 Targeted re-
sequencing
Fusion of ZMYND8 and RELAGenes in Acute Erythroid Leukemia, PLoS
www.ncbi.nlm.nih.gov/pubmed/23667654
Human
2013 Targeted re-
sequencing
CRISPR interference directs strand specific spacer acquisition, PLoS
www.ncbi.nlm.nih.gov/pubmed/22558257
Microorganism
2013 Targeted re-
sequencing
Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas, PLoS
www.ncbi.nlm.nih.gov/pubmed/23824673
Human
2013 Metagenome Impact of oil on bacterial community structure in bioturbated sediments, PLoS
www.ncbi.nlm.nih.gov/pubmed/23762350
Microorganism
2013 Transcriptome RNA deep sequencing reveals novel candidate genes and polymorphisms in boar testis and liver tissues with divergent androstenone levels, PLoS
www.ncbi.nlm.nih.gov/pubmed/23696805
Plant & Animal
2013 Targeted re-
sequencing
Pregnancy-specific glycoproteins bind integrin αIIbβ3 and inhibit the platelet-fibrinogen interaction, PLoS
www.ncbi.nlm.nih.gov/pubmed/23469002
Human
2013 Transcriptome Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/23586929
Microorganism
2013 Transcriptome RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/23530871
Plant & Animal
2013 Targeted re-
sequencing
APOBEC3G impairs the multimerization of the HIV-1 Vif protein in living cells, Journal of Virology
www.ncbi.nlm.nih.gov/pubmed/23576497
Microorganism
2013 Targeted re-
sequencing
Malignant astrocytomas of elderly patients lack favorable molecular markers: an analysis of the NOA-08 study collective, Neuro Oncology
www.ncbi.nlm.nih.gov/pubmed/23595628
Human
2013 Targeted re-
sequencing
The helicase-binding domain of Escherichia coli DnaG primase interacts with the highly conserved C-terminal region of single-stranded DNA-binding protein, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pmc/articles/PMC3632105/
Microorganism
2013 Transcriptome Folding and self-assembly of the TatA translocation pore based on a charge zipper mechanism, Cell
www.ncbi.nlm.nih.gov/pubmed/23332763
Microorganism, Plant & Animal, Human
2013 Metagenome Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning, Scientific Reports NPG
www.ncbi.nlm.nih.gov/pubmed/23739741
Microorganism
2013 Transcriptome Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp., Nature Communications
www.ncbi.nlm.nih.gov/pubmed/23651998
Plant & Animal
2013 Genome Predominant archaea in marine sediments degrade detrital proteins, Nature
www.ncbi.nlm.nih.gov/pubmed/23535597
Microorganism
2013 Metagenome The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing, Scientific Reports NPG
www.ncbi.nlm.nih.gov/pubmed/23475210
Microorganism
2013 Metagenome Archaeal and anaerobic methane oxidizer communities in the Sonora Margin cold seeps, Guaymas Basin (Gulf of California), The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/23446836
Microorganism
2013 Genome Stabilization of cooperative virulence by the expression of an avirulent phenotype, Nature
www.ncbi.nlm.nih.gov/pubmed/23426324
Microorganism
2013 Transcriptome Activation-induced cytidine deaminase (AID) is strongly expressed in the fetal bovine ileal Peyer’s patch and spleen and is associated with expansion of the primary antibody repertoire in the absence of exogenous antigens, Mucosla Immunology
www.ncbi.nlm.nih.gov/pubmed/23299615
Plant & Animal
2012 Genome Genotype of a historic strain of Mycobacterium tuberculosis, PNAS
www.ncbi.nlm.nih.gov/pubmed/23091009
Microorganism
2012 Transcriptome Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton, PLoS
www.ncbi.nlm.nih.gov/pubmed/23166598
Plant & Animal
2012 Metagenome Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing, PLoS
www.ncbi.nlm.nih.gov/pubmed/22723863
Microorganism
2012 Genome EmaxDB: Avalibility of a first draft genome sequence for the apicomlexan Eimeria maxima, Molecular and Biochemical Parasitology
www.ncbi.nlm.nih.gov/pubmed/22465442
Plant & Animal
2012 Metagenome Candidatus Arthromitus' revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae, Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/22436008
Microorganism
2012 Transcriptome Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness, Genome research
www.ncbi.nlm.nih.gov/pubmed/22402787
Plant & Animal
2012 Genome Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus, Journal of General Virology
dx.doi.org/10.1016/j.fm.2012.02.001
Microorganism
2012 Transcriptome An interspecies regulatory network inferred from simultaneous RNA-seq of Candida albicans invading innate immune cells, Frontiers in Microbiology
www.ncbi.nlm.nih.gov/pubmed/22416242
Plant & Animal
2012 Genome Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis, Genome Research
www.ncbi.nlm.nih.gov/pubmed/22399573
Plant & Animal
2012 Genome After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection, Genome Research
www.ncbi.nlm.nih.gov/pubmed/22377718
Microorganism
2012 Genome rplC T460C identified as a dominant mutation in linezolid resistant Mycobacterium tuberculosis strains, Antimicrobial Agents and Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/22371899
Microorganism
2012 Genome Whole-Genome Sequencing of Sodaria macrospora Mutants Identifies Developmental Genes, G3 (Bethesda, MD.)
www.ncbi.nlm.nih.gov/pubmed/22384404
Plant & Animal
2012 Metagenome Similar diversity of Alphaproteobacteria and nitrogenase gene amplicons on two related Sphagnum mosses, Frontiers in Microbiology
www.ncbi.nlm.nih.gov/pubmed/22294982
Plant & Animal, Microorganism
2012 Metagenome The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates, International Society for Microbial Ecology
www.ncbi.nlm.nih.gov/pubmed/22258098
Microorganism
2012 Transcriptome Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/22266655
Microorganism
2012 Genome Multilocus sequence phylogenetic analysis of Avibacterium, Microbiology
www.ncbi.nlm.nih.gov/pubmed/22241047
Microorganism
2012 Transcriptome The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/22251276
Microorganism
2011 Genome Role of bacteriophage SPP1 tail spike protein gp21 on host cell receptor binding and trigger of phage DNA ejection, Molecular Microbiology
www.ncbi.nlm.nih.gov/pubmed/22171743
Microorganism
2011 Transcriptome Assembly, Gene Annotation and Marker Development Using 454 Floral Transcriptome Sequences in Ziziphus Celata (Rhamnaceae), a Highly Endangered, Florida Endemic Plant, DANN Research
www.ncbi.nlm.nih.gov/pubmed/22039173
Plant & Animal
2011 Transcriptome Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia, Genome Biology and Evolution
www.ncbi.nlm.nih.gov/pubmed/21965651
Plant & Animal
2011 Genome Human Polyomavirus Related to African Green Monkey Lymphotropic Polyomavirus, Emerging Infectious Diseases
www.ncbi.nlm.nih.gov/pubmed/21801611
Microorganism
2011 Genome Identification of the First Human Gyrovirus, a Virus Related to Chicken Anemia Virus, Journal of Virology
www.ncbi.nlm.nih.gov/pubmed/21632766
Microorganism
2011 Genome Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae, PNAS
www.ncbi.nlm.nih.gov/pubmed/21987820
Microorganism
2011 Genome Physiological and Toxic Effects of Purine Intermediate 5-Amino-4-imidazolecarboxamide Ribonucleotide (AICAR) in Yeast, The Journal of Biological Chemistry
www.ncbi.nlm.nih.gov/pubmed/21757731
Plant & Animal
2011 Genome Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture, Microbiology
www.ncbi.nlm.nih.gov/pubmed/21700661
Microorganism
2011 Genome Complete Genome Sequences of Four Mammalian Isolates of Chlamydophila psittaci, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21705611
Microorganism
2011 Genome New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21571878
Microorganism
2011 Genome Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy, The Journal of Antimicrobial Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/21565804
Microorganism
2011 Transcriptome Evolution of c4 photosynthesis in the genus flaveria: how many and which genes does it take to make c4?, Plant Cell
www.ncbi.nlm.nih.gov/pubmed/21705644
Plant & Animal
2011 Transcriptome Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics, Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21355971
Microorganism
2011 Transcriptome Functional genomics of the initial phase of coldadaptation of Pseudomonas putida KT2440, FEMS Microbiology Letters
www.ncbi.nlm.nih.gov/pubmed/21306427
Microorganism
2011 Transcriptome Regulatory Mechanisms Underlying Oil Palm Fruit Mesocarp Maturation, Ripening, and Functional Specialization in Lipid and Carotenoid Metabolism, Plant Physiology
www.ncbi.nlm.nih.gov/pubmed/21487046
Plant & Animal
2011 Targeted re-sequencing Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection, Blood
www.ncbi.nlm.nih.gov/pubmed/21403130
Microorganism
2011 Transcriptome Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes, Molecular Biology and Evolution
www.ncbi.nlm.nih.gov/pubmed/20829345
Plant & Animal
2011 Genome The Genome of a European Fresh Vegetable Food Safety Outbreak Strain Salmonella enterica subsp. enterica serovar Weltevreden, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21296964
Microorganism
2011 Metagenome Pyrosequencing of Antibiotic-Contaminated River. Sediments Reveals High Levels of Resistance and Gene Transfer Elements, PloS One
www.ncbi.nlm.nih.gov/pubmed/21359229
Microorganism
2011 Genome Molecular description and industrial potential of Tn6098-mediated conjugative transfer of alpha-galactosides metabolism in Lactococcus lactis, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21115709
Microorganism
2011 Metagenome Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21257804
Microorganism
2011 Genome Full length de novo sequence of the Chlamydophila psittaci type strain 6BC, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21441521
Microorganism
2011 Genome Complete Genome Sequence of Lactococcus lactis subsp. lactis KF147, a Plant-Associated Lactic Acid BacteriumJournal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/20348266
Microorganism
2010 Genome The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/20675499
Microorganism
2010 Transcriptome Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/20233449
Plant & Animal
2010 Transcriptome The Differential Evolutionary Dynamics of Avian Cytokine and TLR Gene Classes, Journal of Immunology
www.ncbi.nlm.nih.gov/pubmed/20483729
Plant & Animal
2010 Targeted re-sequencing Targeted resequencing of candidate genes using selector probes, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/21059679
Human
2010 Genome Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa, Journal of Medical Genetics
www.ncbi.nlm.nih.gov/pubmed/21147909
Human
2010 Metagenome Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing, International Society for Microbial Ecology
www.ncbi.nlm.nih.gov/pubmed/20393571
Microorganism
2010 Genome Complete Genome Sequence of Cronobacter turicensis LMG 23827, a Food-Borne Pathogen Causing Deaths in Neonates, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21037008
Microorganism
2010 Genome A Two-Component Regulatory System Interconnects Resistance to Polymyxins, Aminoglycosides, Fluoroquinolones, and Beta-Lactams in Pseudomonas aeruginosa, Antimicrobial Agents and Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/21149619
Microorganism
2010 Genome A multiresistance megaplasmid pLG1 bearing a hylEfm genomic island in hospital Enterococcus faecium isolates, International Journal of Medical Microbiology
www.ncbi.nlm.nih.gov/pubmed/20951641
Microorganism
2009 Metagenome Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest, The New Phytologist
www.ncbi.nlm.nih.gov/pubmed/19558424
Plant & Animal
2009 Regulome Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing, Plant Physiology
www.ncbi.nlm.nih.gov/pubmed/19465578
Plant & Animal
2009 Genome Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris, Microbial Cell Factories
www.ncbi.nlm.nih.gov/pubmed/19490607
Plant & Animal
2009 Genome Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains, Microbial Cell Factories
www.ncbi.nlm.nih.gov/pubmed/20023018
Microorganism
2009 Transcriptome A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/20398411
Microorganism
2008 Genome Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/18976483
Plant & Animal
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