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Reference Papers

 

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Year Application Title Fields of interest
2015 De novo genome Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1, Standards in Genomic Sciences
www.standardsingenomics.com/content/10/1/42
Microorganism
2015 Transcriptome Post-transcriptional gene silencing triggered by sense transgenes involves uncapped antisense RNA and differs from silencing intentionally triggered by antisense transgenes, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/26209135
Plant & Animal
2015 Transcriptome Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica, PLoS ONE
www.ncbi.nlm.nih.gov/pubmed/26186457
Plant & Animal
2015 Microbiome Modulation of gut microbiota in rats fed high‐fat diets by processing whole‐grain barley to barley malt, Molecular Nutrition & Food Research
www.ncbi.nlm.nih.gov/pubmed/26184884
Microorganism
2015 De novo genome Complete Genome Sequence of a CTX-M-15-Producing Klebsiella pneumoniae Outbreak Strain from Multilocus Sequence Type 514, Genome Announcements
www.ncbi.nlm.nih.gov/pubmed/26159529
Microorganism
2015 Microbiome Concentrations of viable oil-degrading microorganisms are increased in feces from Calanus finmarchicus feeding in petroleum oil dispersions, Marine Pollution Bulletin
www.ncbi.nlm.nih.gov/pubmed/26164782
Microorganism
2015 Targeted re-
sequencing
The recurrent chromosomal translocation t (12; 18)(q14~ 15; q12~ 21) causes the fusion gene HMGA2-SETBP1 and HMGA2 expression in lipoma and osteochondrolipoma, International Journal of Oncology
www.ncbi.nlm.nih.gov/pubmed/26202160
Human
2015 Microbiome Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards, Plant and Soils
link.springer.com/article/10.1007%2Fs11104-015-2562-x
Plant & Animal
2015 Transcriptome Photosynthetic genes and genes associated with the C4 trait in maize are characterized by a new class of highly regulated histone acetylation peaks on upstream promoters, Plant Physiology
www.ncbi.nlm.nih.gov/pubmed/26111542
Plant & Animal
2015 Transcriptome Venomics of the Australian eastern brown snake (Pseudonaja textilis): Detection of new venom proteins and splicing variants, Toxicon
www.ncbi.nlm.nih.gov/pubmed/26079951
Plant & Animal
2015 Targeted re-
sequencing
Inefficient microbial production of refractory dissolved organic matter in the ocean, Nature Communications
www.ncbi.nlm.nih.gov/pubmed/26084883
Microorganism
2015 Targeted re-
sequencing
Cysteine scanning reveals minor local rearrangements of the horizontal helix of respiratory complex, Molecular Microbiology
www.ncbi.nlm.nih.gov/pubmed/26115017
Microorganism
2015 Targeted re-
sequencing
PTEN regulates IGF‐1R mediated therapy resistance in melanoma, Pigment Cell & Melanoma
www.ncbi.nlm.nih.gov/pubmed/26112748
Human
2015 Targeted re-
sequencing
Amid the possible causes of a very famous foxing: molecular and microscopic insight into Leonardo da Vinci's self‐portrait, Environmental Microbiology Reports
www.ncbi.nlm.nih.gov/pubmed/26111623
Microorganism
2015 Transcriptome Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance, PLOS Pathogens
www.ncbi.nlm.nih.gov/pubmed/25951442
Microorganism
2015 De novo genome Under-detection of endospore-forming Firmicutes in metagenomic data, Computational and Structural Biotechnology Journal
www.ncbi.nlm.nih.gov/pubmed/25973144
Microorganism
2015 Transcriptome Impact of preconditioning with retinoic acid during early development on morphological and functional characteristics of human induced pluripotent stem cell-derived neurons, Stem Cell Research
www.ncbi.nlm.nih.gov/pubmed/26001168
Human
2015 Targeted re-
sequencing
Insights into the origin of the nuclear localization signals in conserved ribosomal proteins, Nature Communications
www.ncbi.nlm.nih.gov/pubmed/26066547
Microorganism, Human
2015 Targeted re-
sequencing
Diverse Antibody Genetic and Recognition Properties Revealed following HIV-1 Envelope Glycoprotein Immunization, The Journal of Immunology
www.ncbi.nlm.nih.gov/pubmed/25964491
Plant & Animal
2015 Targeted re-
sequencing
Evaluation of BRCA1/2 mutational status among German and Austrian women with triple-negative breast cancer, Journal of Cancer Research and Clinical Oncology
www.ncbi.nlm.nih.gov/pubmed/25971625
Human
2015 Transcriptome Trancriptomic approach reveals the molecular diversity of Hottentotta conspersus (Buthidae) venom, Toxicon
www.ncbi.nlm.nih.gov/pubmed/
Plant & Animal
2015 Transcriptome Lactobacillus ruminis strains cluster according to their mammalian gut source, BMC Microbiology
www.ncbi.nlm.nih.gov/pubmed/
Mikroorgansimen
2015 Targeted re-
sequencing
Genetic characterization of Chikungunya virus in the Central African Republic, Infection, Genetics and Evolution
www.ncbi.nlm.nih.gov/pubmed/
Microorganism
2014 Metagenome SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sedime, The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/
Microorganism
2015 Targeted re-
sequencingy
A Quaternary Mechanism Enables the Complex Biological Functions of Octameric Human UDP-glucose Pyrophosphorylase, a Key Enzyme in Cell Metabolism, Nature Scientific Reports
www.ncbi.nlm.nih.gov/pubmed/
Human
2015 Targeted re-
sequencing
HMGA2 expression pattern and TERT mutations in tumors of the vulva, Oncology Reports
www.ncbi.nlm.nih.gov/pubmed/
Human
2015 Targeted re-
sequencing
Mutations in the Latent TGF-beta Binding Protein 3 (LTBP3) gene cause brachyolmia with amelogenesis imperfecta, Human Molecular Genetics
www.ncbi.nlm.nih.gov/pubmed/25669657
Human
2015 Targeted re-
sequencing
Degradation of a textile azo dye using biological treatment followed by photo-Fenton oxidation: evaluation of toxicity and microbial community structure, Chemical Engineering Journal
dx.doi.org/10.1016/j.cej.2015.02.042
Microorganism
2015 Targeted re-
sequencing
A GH57 4-α-glucanotransferase of hyperthermophilic origin with potential for alkyl glycoside production, Applied Microbiology and Biotechnology
www.ncbi.nlm.nih.gov/pubmed/25693671
Plant & Animal
2015 Targeted re-
sequencing
HNRNP G and HTRA2-BETA1 regulate estrogen receptor alpha expression with potential impact on endometrial cancer, BMC Cancer
www.ncbi.nlm.nih.gov/pubmed/25777416
Human
2015 Targeted re-
sequencing,
Genome
Transhydrogenase Promotes the Robustness and Evolvability of E. coli Deficient in NADPH Production, PLOS Genetics
www.ncbi.nlm.nih.gov/pubmed/25715029
Microorganism
2015 Targeted re-
sequencing
Aldose reductases influence prostaglandin F2α Levels and adipocyte differentiation in male mouse and human species, Endocrinology
www.ncbi.nlm.nih.gov/pubmed/25730106
Plant & Animal,
Human
2015 Targeted re-
sequencing
Methylation status of HPV16 E2‐binding sites classifies subtypes of HPV‐associated oropharyngeal cancers, Cancer
www.ncbi.nlm.nih.gov/pubmed/25731880
Microorganism,
Human
2015 Targeted re-
sequencing
Pseudozyma aphidis Fungemia after abdominal surgery: First adult case, Medical Mycology
dx.doi.org/10.1016/j.mmcr.2015.03.001
Microorganism,
Human
2015 Targeted re-
sequencing
Determination of methanogenic pathways through carbon isotope (δ13C) analysis for the two-stage anaerobic digestion of high-solids substrates, Environmental Science & Technology
www.ncbi.nlm.nih.gov/pubmed/25741999
Microorganism
2015 Targeted re-
sequencing
Human primordial germ cell commitment in vitro associates with a unique PRDM14 expression profile, The EMBO Journal
www.ncbi.nlm.nih.gov/pubmed/25750208
Microorganism,
Human
2015 Targeted re-
sequencing
Evidence of the Generation of Isosaccharinic Acids and Their Subsequent Degradation by Local Microbial Consortia within Hyper-Alkaline Contaminated Soils, with Relevance to Intermediate Level Radioactive Waste Disposal, PLOS One
www.ncbi.nlm.nih.gov/pubmed/25748643
Microorganism
2015 Targeted re-
sequencing
SOX11 identified by target gene evaluation of miRNAs differentially expressed in focal and non-focal brain tissue of therapy-resistant epilepsy patients, Neurobiology of Disease
www.ncbi.nlm.nih.gov/pubmed/25766675
Human
2015 Genome Draft Genome Sequence of the Quorum-Sensing and Biofilm-Producing Pseudomonas aeruginosa Strain Pae221, Belonging to the Epidemic High-Risk Clone Sequence Type 274, Genome Announcements
www.ncbi.nlm.nih.gov/pubmed/25593247
Microorganism
2015 Targeted re-
sequencing
High-Throughput Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat Genotyping for Mycobacterium tuberculosis Epidemiological Studies, Journal of Clinical Microbiology
www.ncbi.nlm.nih.gov/pubmed/25428144
Microorganism
2015 Targeted re-
sequencing
The Role of Telomerase Protein TERT in Alzheimer's Disease and in Tau-Related Pathology In Vitro, The Journal of Neuroscience
www.ncbi.nlm.nih.gov/pubmed/25632141
Human
2015 Targeted re-
sequencing
Food Sensing: Selection and Characterization of DNA Aptamers to Alicyclobacillus Spores for Trapping and Detection from Orange Juice, Journal of Agricultural and Food Chemistry
www.ncbi.nlm.nih.gov/pubmed/25639310
Microorganism
2015 Targeted re-
sequencing
A sting in the spit: widespread cross‐infection of multiple RNA viruses across wild and managed bees, Journal of Animal Ecology
www.ncbi.nlm.nih.gov/pubmed/25646973
Plant & Animal
2015 Targeted re-
sequencing
High‐affinity nitrate/nitrite transporter genes (Nrt2) in Tisochrysis lutea: Identification and expression analyses reveal some interesting specificities of Haptophyta microalgae, Physiologia Plantarum
www.ncbi.nlm.nih.gov/pubmed/25640753
Plant & Animal
2015 Targeted re-
sequencing
Form follows function in geminiviral minichromosome architecture, Virus Research
www.ncbi.nlm.nih.gov/pubmed/25445344
Microorganism
2015 Targeted re-
sequencing
Production of 3-hydroxypropionic acid from 3-hydroxypropionaldehyde by recombinant Escherichia coli co-expressing Lactobacillus reuteri propanediol utilization enzymes, Bioresource Technology
www.ncbi.nlm.nih.gov/pubmed/25614245
Microorganism
2015 Transcriptome Defining the transcriptomic landscape of Candida glabrata by RNA-Seq, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/25586221
Microorganism
2015 Targeted re-
sequencing
A proton relay enhances H2O2 sensitivity of GAPDH to facilitate metabolic adaptation, Nature Chemical Biology
www.ncbi.nlm.nih.gov/pubmed/25580853
Microorganism,
Plant & Animal,
Human
2015 Targeted re-
sequencing
Rational Design of an Efficient, Genetically-Encodable, Protein-Encased Singlet Oxygen Photosensitizer, Journal of the American Chemical Society
www.ncbi.nlm.nih.gov/pubmed/25575190
Microorganism,
Plant & Animal,
Human
2014 Metagenome Current strategies for mobilome research, Frontiers in Microbiology
www.ncbi.nlm.nih.gov/pubmed/25657641
Animal & Plant,
Microorganism
2014 Exome Prediction of chronic lung allograft dysfunction: a systems medicine challenge, European Respiratory Journal
www.ncbi.nlm.nih.gov/pubmed/24585866
Human
2014 Targeted re-
sequencing
Diagnostics of Primary Immunodeficiency Diseases: A Sequencing Capture Approach, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25502423
Human
2014 Metagenome Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/25496341
Microorganism
2014 Targeted re-
sequencing
A MAT1-2 wild-type strain from Penicillium chrysogenum: Functional mating-type locus characterization, genome sequencing, and mating with an industrial penicillin-producing strain, Molecular Microbiology
www.ncbi.nlm.nih.gov/pubmed/25521009
Microorganism
2014 Targeted re-
sequencing
Universal Single-Probe RT-PCR Assay for Diagnosis of Dengue Virus Infections, PLOS Neglected Tropical Diseases
www.ncbi.nlm.nih.gov/pubmed/25522325
Microorganism
2014 Targeted re-
sequencing
Implications of Targeted Genomic Disruption of ß-Catenin in BxPC-3 Pancreatic Adenocarcinoma Cells, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25536063
Human
2014 Targeted re-
sequencing
Stable Composition of the Nano-and Picoplankton Community during the Ocean Iron, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25401706
Microorganism,
Plant & Animal
2014 Transcriptome Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types, Marine Genomics
www.ncbi.nlm.nih.gov/pubmed/24703884
Plant & Animal
2014 Genome Error correction and diversity analysis of population mixtures determined by NGS, PeerJ
www.ncbi.nlm.nih.gov/pubmed/25405074
Microorganism
2014 Targeted re-
sequencing
FXR is a molecular target for the effects of vertical sleeve gastrectomy, Nature
www.ncbi.nlm.nih.gov/pubmed/24670636
Human, Microorganism
2014 Genome & Exome Genome Sequencing of SHH Medulloblastoma Predicts Genotype-Related Response to Smoothened Inhibition, Cancer Cell www.ncbi.nlm.nih.gov/pubmed/24651015 Human
2014 Targeted re-
sequencing
DNA-guided DNA interference by a prokaryotic Argonaute, Nature www.ncbi.nlm.nih.gov/pubmed/24531762 Microorganism
2014 Targeted re-
sequencing
Early hypercytokinemia is associated with interferon-induced transmembrane protein-3 dysfunction and predictive of fatal H7N9 infection, Nature
www.ncbi.nlm.nih.gov/pubmed/24367104
Human, Microorganism, Plant & Animal
2014 Targeted re-
sequencing
RIPK1 maintains epithelial homeostasis by inhibiting apoptosis and necroptosis, Nature
www.ncbi.nlm.nih.gov/pubmed/25132550
Plant & Animal
2014 Targeted re-
sequencing
High-throughput MIRU-VNTR genotyping for Mycobacterium tuberculosis epidemiological studies., Journal of Clinical Microbiology
www.ncbi.nlm.nih.gov/pubmed/25428144
Microorganism
2014 Targeted re-
sequencing
The novel ADAMTS13‐p. D187H mutation impairs ADAMTS13 activity and secretion and contributes to thrombotic thrombocytopenic purpura in mice, Journal of Thrombosis and Haemostasis
www.ncbi.nlm.nih.gov/pubmed/25442981
Plant & Animal
2014 Targeted re-
sequencing
Clostridium cluster I and their pathogenic members in a full-scale operating biogas plant, Applied Microbiology and Biotechnology
www.ncbi.nlm.nih.gov/pubmed/25472441
Microorganism
2014 Targeted re-
sequencing
Novel TNS3-MAP3K3 and ZFPM2-ELF5 fusion genes identified by RNA sequencing in multicystic mesothelioma with t(7;17)(p12;q23) and t(8;11)(q23;p13), Cancer Letters
www.ncbi.nlm.nih.gov/pubmed/25484136
Human
2014 Targeted re-
sequencing
Creation of targeted genomic deletions using TALEN or CRISPR/Cas nuclease pairs in one-cell mouse embryos, FEBS Open Bio
www.ncbi.nlm.nih.gov/pubmed/23555929
Plant & Animal
2014 Targeted re-
sequencing
CSN-associated USP48 confers stability to nuclear NF-κB/RelA by trimming K48-linked Ub-chains, Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
www.ncbi.nlm.nih.gov/pubmed/25486460
Human
2014 Targeted re-
sequencing
High plasma sEPCR levels are associated with increased mortality in children with cerebral malaria in Benin, Journal of Infectious Diseases
www.ncbi.nlm.nih.gov/pubmed/25425698
Human,
Microorganism
2014 Targeted re-
sequencing
Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25333370
Plant & Animal
2014 Targeted re-
sequencing
Importance of branched-chain amino acid utilization in Francisella intracellular adaptation, Infection and Immunity
www.ncbi.nlm.nih.gov/pubmed/25332124
Microorganism
2014 Targeted re-
sequencing
Impact of the HIV integrase genetic context on the phenotypic expression and in vivo emergence of raltegravir resistance mutations, J. of Antimicrobial Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/25336162
Human,
Microorganism
2014 Metagenome Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys, J Eukaryot Microbiol.
www.ncbi.nlm.nih.gov/pubmed/25312509
Microorganism
2014 Genome Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to the virus fitness, Journal of Virology
www.ncbi.nlm.nih.gov/pubmed/25275139
Microorganism
2014 Genome Genome sequence of Vibrio diabolicus and identification of the exopolysaccharide HE800 biosynthesis locus, Applied Microbiology and Biotechnology
www.ncbi.nlm.nih.gov/pubmed/25273176
Microorganism
2014 Targeted re-
sequencing
Utilization of organophosphate: phosphate antiporter for isotope‐labeling experiments in E. coli,
FEMS Microbiology Letters
www.ncbi.nlm.nih.gov/pubmed/25273627
Microorganism
2014 Metagenome The composition of arbuscular mycorrhizal fungal communities in the roots of a ruderal forb is not related to the forest fragmentation process, Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/25243926
Plant & Animal
2014 Transcriptome Screening in Planarians Identifies MORN2 as a Key Component in LC3-Associated Phagocytosis and Resistance to Bacterial Infection, Cell Host & Microbe
www.ncbi.nlm.nih.gov/pubmed/25211076
Plant & Animal,
Microorganism
2014 Transcriptome Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/25216596
Plant & Animal
2014 Genome Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli, mBio
www.ncbi.nlm.nih.gov/pubmed/25205090
Microorganism
2014 Genome PRO40 Is a Scaffold Protein of the Cell Wall Integrity Pathway, Linking the MAP Kinase Module to the Upstream Activator Protein Kinase C, PLOS genetics
www.ncbi.nlm.nih.gov/pubmed/25188365
Plant & Animal
2014 Metagenome Halophilic Microorganisms Are Responsible for the Rosy Discolouration of Saline Environments in Three Historical Buildings with Mural Paintings, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25084531
Microorganism
2014 Metagenome Abiotic stress tolerance and competition‐related traits underlie phylogenetic clustering in soil bacterial communities, Ecology Letters
www.ncbi.nlm.nih.gov/pubmed/25130277
Microorganism
2014 Genome The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25126841
Microorganism
2014 Transcirptome & targeted re-
sequencing
Viral load, gene expression and mapping of viral integration sites in HPV16‐associated HNSCC cell lines, International Journal of Cancer
www.ncbi.nlm.nih.gov/pubmed/25082736
Microorganism,
Human
2014 Epigenome DNA methylation markers for early detection of women's cancer: promise and challenges, Epigenomics
www.ncbi.nlm.nih.gov/pubmed/25111485
Human
2014 Transcriptome ABC transporters are involved in defense against permethrin insecticide in the malaria vector Anopheles stephensi, Parasites & Vectors
www.ncbi.nlm.nih.gov/pubmed/25073980
Plant & Animal
2014 Genome The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae, PLOS ONE
www.ncbi.nlm.nih.gov/pubmed/25072852
Microorganism
2014 Targeted re-
sequencing
Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma, Nature
www.ncbi.nlm.nih.gov/pubmed/25043047
Human
2014 Targeted re-
sequencing
Identification of Yeast and Human 5-Aminoimidazole-4-carboxamide-1-β-d-ribofuranoside (AICAr) Transporters,
The Journal of Biological Chemistry
www.ncbi.nlm.nih.gov/pubmed/24778186
Plant & Animal,
Human
2014 Transcriptome An Avian Retrovirus Uses Canonical Expression and Processing Mechanisms To Generate Viral MicroRNA, J. Virol.
www.ncbi.nlm.nih.gov/pubmed/24155381
Microorganism
2014 Genome Whole Genome Sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: Potential impact on the inference of tuberculosis transmission, J Infect Dis
www.ncbi.nlm.nih.gov/pubmed/23945373
Microorganism
2014 Metagenome Importance of soil organic matter for the diversity of microorganisms involved in the degradation of organic pollutants, The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/24430482
Microorganism
2014 Targeted re-
sequencing
Tau exon 2 responsive elements deregulated in myotonic dystrophy type I are proximal to exon 2 and synergistically regulated by MBNL1 and MBNL2, Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
www.ncbi.nlm.nih.gov/pubmed/24440524
Human
2014 Targeted re-
sequencing
Ancient DNA Analysis Reveals High Frequency of European Lactase Persistence Allele (T-13910) in Medieval Central Europe, PLoS ONE
www.ncbi.nlm.nih.gov/pubmed/24465990
Human
2013 Targeted re-
sequencing
GRIN2A mutations in acquired epileptic aphasia and related childhood focal epilepsies and encephalopathies with speech and language dysfunction, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23933820
Human
2013 Targeted re-
sequencing
Establishment of totipotency does not depend on Oct4A, Nature Cell Biology
www.ncbi.nlm.nih.gov/pubmed/23934214
Human
2013 Genome The wheat powdery mildew genome shows the unique evolution of an obligate biotroph, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23852167
Plant & Animal
2013 Targeted re-
sequencing
Recurrent somatic alterations of FGFR1and NTRK2 in pilocytic astrocytoma, Nature Genetics
www.ncbi.nlm.nih.gov/pubmed/23817572
Human
2013 Metagenome Evidence for successional development in Antarctic hypolithic bacterial communities, The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/23765099
Microorganism
2013 Metagenome Gut metagenome in European women with normal, impaired and diabetic glucose, Nature
www.ncbi.nlm.nih.gov/pubmed/23719380
Human
2013 Targeted re-
sequencing
Structure of the Legionella effector AnkX reveals the mechanism of phosphocholine transfer by the FIC domain, The EMBO Journal
www.ncbi.nlm.nih.gov/pubmed/23572077
Microorganism
2013 Targeted re-
sequencing
Expression of recombinant human complement C1q allows identification of the C1r/C1s-binding Sites, PNAS
www.ncbi.nlm.nih.gov/pubmed/23650384
Human
2013 Metagenome A Metagenomic Study Highlights Phylogenetic Proximity of Quorum-Quenching and Xenobiotic-Degrading Amidases of the AS-Family, PLoS
www.ncbi.nlm.nih.gov/pubmed/23762380
Microorganism
2013 Targeted re-
sequencing
Fusion of ZMYND8 and RELAGenes in Acute Erythroid Leukemia, PLoS
www.ncbi.nlm.nih.gov/pubmed/23667654
Human
2013 Targeted re-
sequencing
CRISPR interference directs strand specific spacer acquisition, PLoS
www.ncbi.nlm.nih.gov/pubmed/22558257
Microorganism
2013 Targeted re-
sequencing
Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas, PLoS
www.ncbi.nlm.nih.gov/pubmed/23824673
Human
2013 Metagenome Impact of oil on bacterial community structure in bioturbated sediments, PLoS
www.ncbi.nlm.nih.gov/pubmed/23762350
Microorganism
2013 Transcriptome RNA deep sequencing reveals novel candidate genes and polymorphisms in boar testis and liver tissues with divergent androstenone levels, PLoS
www.ncbi.nlm.nih.gov/pubmed/23696805
Plant & Animal
2013 Targeted re-
sequencing
Pregnancy-specific glycoproteins bind integrin αIIbβ3 and inhibit the platelet-fibrinogen interaction, PLoS
www.ncbi.nlm.nih.gov/pubmed/23469002
Human
2013 Transcriptome Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/23586929
Microorganism
2013 Transcriptome RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/23530871
Plant & Animal
2013 Targeted re-
sequencing
APOBEC3G impairs the multimerization of the HIV-1 Vif protein in living cells, Journal of Virology
www.ncbi.nlm.nih.gov/pubmed/23576497
Microorganism
2013 Targeted re-
sequencing
Malignant astrocytomas of elderly patients lack favorable molecular markers: an analysis of the NOA-08 study collective, Neuro Oncology
www.ncbi.nlm.nih.gov/pubmed/23595628
Human
2013 Targeted re-
sequencing
The helicase-binding domain of Escherichia coli DnaG primase interacts with the highly conserved C-terminal region of single-stranded DNA-binding protein, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pmc/articles/PMC3632105/
Microorganism
2013 Transcriptome Folding and self-assembly of the TatA translocation pore based on a charge zipper mechanism, Cell
www.ncbi.nlm.nih.gov/pubmed/23332763
Microorganism, Plant & Animal, Human
2013 Metagenome Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning, Scientific Reports NPG
www.ncbi.nlm.nih.gov/pubmed/23739741
Microorganism
2013 Transcriptome Characterization of salt-adapted secreted lignocellulolytic enzymes from the mangrove fungus Pestalotiopsis sp., Nature Communications
www.ncbi.nlm.nih.gov/pubmed/23651998
Plant & Animal
2013 Genome Predominant archaea in marine sediments degrade detrital proteins, Nature
www.ncbi.nlm.nih.gov/pubmed/23535597
Microorganism
2013 Metagenome The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing, Scientific Reports NPG
www.ncbi.nlm.nih.gov/pubmed/23475210
Microorganism
2013 Metagenome Archaeal and anaerobic methane oxidizer communities in the Sonora Margin cold seeps, Guaymas Basin (Gulf of California), The ISME Journal
www.ncbi.nlm.nih.gov/pubmed/23446836
Microorganism
2013 Genome Stabilization of cooperative virulence by the expression of an avirulent phenotype, Nature
www.ncbi.nlm.nih.gov/pubmed/23426324
Microorganism
2013 Transcriptome Activation-induced cytidine deaminase (AID) is strongly expressed in the fetal bovine ileal Peyer’s patch and spleen and is associated with expansion of the primary antibody repertoire in the absence of exogenous antigens, Mucosla Immunology
www.ncbi.nlm.nih.gov/pubmed/23299615
Plant & Animal
2012 Genome Genotype of a historic strain of Mycobacterium tuberculosis, PNAS
www.ncbi.nlm.nih.gov/pubmed/23091009
Microorganism
2012 Transcriptome Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton, PLoS
www.ncbi.nlm.nih.gov/pubmed/23166598
Plant & Animal
2012 Metagenome Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing, PLoS
www.ncbi.nlm.nih.gov/pubmed/22723863
Microorganism
2012 Genome EmaxDB: Avalibility of a first draft genome sequence for the apicomlexan Eimeria maxima, Molecular and Biochemical Parasitology
www.ncbi.nlm.nih.gov/pubmed/22465442
Plant & Animal
2012 Metagenome Candidatus Arthromitus' revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae, Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/22436008
Microorganism
2012 Transcriptome Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness, Genome research
www.ncbi.nlm.nih.gov/pubmed/22402787
Plant & Animal
2012 Genome Novel Streptococcus infantarius subsp. infantarius variants harboring lactose metabolism genes homologous to Streptococcus thermophilus, Journal of General Virology
dx.doi.org/10.1016/j.fm.2012.02.001
Microorganism
2012 Transcriptome An interspecies regulatory network inferred from simultaneous RNA-seq of Candida albicans invading innate immune cells, Frontiers in Microbiology
www.ncbi.nlm.nih.gov/pubmed/22416242
Plant & Animal
2012 Genome Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis, Genome Research
www.ncbi.nlm.nih.gov/pubmed/22399573
Plant & Animal
2012 Genome After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection, Genome Research
www.ncbi.nlm.nih.gov/pubmed/22377718
Microorganism
2012 Genome rplC T460C identified as a dominant mutation in linezolid resistant Mycobacterium tuberculosis strains, Antimicrobial Agents and Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/22371899
Microorganism
2012 Genome Whole-Genome Sequencing of Sodaria macrospora Mutants Identifies Developmental Genes, G3 (Bethesda, MD.)
www.ncbi.nlm.nih.gov/pubmed/22384404
Plant & Animal
2012 Metagenome Similar diversity of Alphaproteobacteria and nitrogenase gene amplicons on two related Sphagnum mosses, Frontiers in Microbiology
www.ncbi.nlm.nih.gov/pubmed/22294982
Plant & Animal, Microorganism
2012 Metagenome The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates, International Society for Microbial Ecology
www.ncbi.nlm.nih.gov/pubmed/22258098
Microorganism
2012 Transcriptome Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/22266655
Microorganism
2012 Genome Multilocus sequence phylogenetic analysis of Avibacterium, Microbiology
www.ncbi.nlm.nih.gov/pubmed/22241047
Microorganism
2012 Transcriptome The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/22251276
Microorganism
2011 Genome Role of bacteriophage SPP1 tail spike protein gp21 on host cell receptor binding and trigger of phage DNA ejection, Molecular Microbiology
www.ncbi.nlm.nih.gov/pubmed/22171743
Microorganism
2011 Transcriptome Assembly, Gene Annotation and Marker Development Using 454 Floral Transcriptome Sequences in Ziziphus Celata (Rhamnaceae), a Highly Endangered, Florida Endemic Plant, DANN Research
www.ncbi.nlm.nih.gov/pubmed/22039173
Plant & Animal
2011 Transcriptome Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia, Genome Biology and Evolution
www.ncbi.nlm.nih.gov/pubmed/21965651
Plant & Animal
2011 Genome Human Polyomavirus Related to African Green Monkey Lymphotropic Polyomavirus, Emerging Infectious Diseases
www.ncbi.nlm.nih.gov/pubmed/21801611
Microorganism
2011 Genome Identification of the First Human Gyrovirus, a Virus Related to Chicken Anemia Virus, Journal of Virology
www.ncbi.nlm.nih.gov/pubmed/21632766
Microorganism
2011 Genome Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae, PNAS
www.ncbi.nlm.nih.gov/pubmed/21987820
Microorganism
2011 Genome Physiological and Toxic Effects of Purine Intermediate 5-Amino-4-imidazolecarboxamide Ribonucleotide (AICAR) in Yeast, The Journal of Biological Chemistry
www.ncbi.nlm.nih.gov/pubmed/21757731
Plant & Animal
2011 Genome Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture, Microbiology
www.ncbi.nlm.nih.gov/pubmed/21700661
Microorganism
2011 Genome Complete Genome Sequences of Four Mammalian Isolates of Chlamydophila psittaci, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21705611
Microorganism
2011 Genome New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21571878
Microorganism
2011 Genome Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy, The Journal of Antimicrobial Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/21565804
Microorganism
2011 Transcriptome Evolution of c4 photosynthesis in the genus flaveria: how many and which genes does it take to make c4?, Plant Cell
www.ncbi.nlm.nih.gov/pubmed/21705644
Plant & Animal
2011 Transcriptome Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics, Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21355971
Microorganism
2011 Transcriptome Functional genomics of the initial phase of coldadaptation of Pseudomonas putida KT2440, FEMS Microbiology Letters
www.ncbi.nlm.nih.gov/pubmed/21306427
Microorganism
2011 Transcriptome Regulatory Mechanisms Underlying Oil Palm Fruit Mesocarp Maturation, Ripening, and Functional Specialization in Lipid and Carotenoid Metabolism, Plant Physiology
www.ncbi.nlm.nih.gov/pubmed/21487046
Plant & Animal
2011 Targeted re-sequencing Lentiviral vector common integration sites in preclinical models and a clinical trial reflect a benign integration bias and not oncogenic selection, Blood
www.ncbi.nlm.nih.gov/pubmed/21403130
Microorganism
2011 Transcriptome Transcriptomic Evidence That Longevity of Acquired Plastids in the Photosynthetic Slugs Elysia timida and Plakobranchus ocellatus Does Not Entail Lateral Transfer of Algal Nuclear Genes, Molecular Biology and Evolution
www.ncbi.nlm.nih.gov/pubmed/20829345
Plant & Animal
2011 Genome The Genome of a European Fresh Vegetable Food Safety Outbreak Strain Salmonella enterica subsp. enterica serovar Weltevreden, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21296964
Microorganism
2011 Metagenome Pyrosequencing of Antibiotic-Contaminated River. Sediments Reveals High Levels of Resistance and Gene Transfer Elements, PloS One
www.ncbi.nlm.nih.gov/pubmed/21359229
Microorganism
2011 Genome Molecular description and industrial potential of Tn6098-mediated conjugative transfer of alpha-galactosides metabolism in Lactococcus lactis, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21115709
Microorganism
2011 Metagenome Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples, Applied and Environmental Microbiology
www.ncbi.nlm.nih.gov/pubmed/21257804
Microorganism
2011 Genome Full length de novo sequence of the Chlamydophila psittaci type strain 6BC, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21441521
Microorganism
2011 Genome Complete Genome Sequence of Lactococcus lactis subsp. lactis KF147, a Plant-Associated Lactic Acid BacteriumJournal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/20348266
Microorganism
2010 Genome The genome sequence of the cyanobacterium Oscillatoria sp. PCC 6506 reveals several gene clusters responsible for the biosynthesis of toxins and secondary metabolites, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/20675499
Microorganism
2010 Transcriptome Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/20233449
Plant & Animal
2010 Transcriptome The Differential Evolutionary Dynamics of Avian Cytokine and TLR Gene Classes, Journal of Immunology
www.ncbi.nlm.nih.gov/pubmed/20483729
Plant & Animal
2010 Targeted re-sequencing Targeted resequencing of candidate genes using selector probes, Nucleic Acids Research
www.ncbi.nlm.nih.gov/pubmed/21059679
Human
2010 Genome Molecular diagnosis for heterogeneous genetic diseases with targeted high-throughput DNA sequencing applied to retinitis pigmentosa, Journal of Medical Genetics
www.ncbi.nlm.nih.gov/pubmed/21147909
Human
2010 Metagenome Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing, International Society for Microbial Ecology
www.ncbi.nlm.nih.gov/pubmed/20393571
Microorganism
2010 Genome Complete Genome Sequence of Cronobacter turicensis LMG 23827, a Food-Borne Pathogen Causing Deaths in Neonates, Journal of Bacteriology
www.ncbi.nlm.nih.gov/pubmed/21037008
Microorganism
2010 Genome A Two-Component Regulatory System Interconnects Resistance to Polymyxins, Aminoglycosides, Fluoroquinolones, and Beta-Lactams in Pseudomonas aeruginosa, Antimicrobial Agents and Chemotherapy
www.ncbi.nlm.nih.gov/pubmed/21149619
Microorganism
2010 Genome A multiresistance megaplasmid pLG1 bearing a hylEfm genomic island in hospital Enterococcus faecium isolates, International Journal of Medical Microbiology
www.ncbi.nlm.nih.gov/pubmed/20951641
Microorganism
2009 Metagenome Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest, The New Phytologist
www.ncbi.nlm.nih.gov/pubmed/19558424
Plant & Animal
2009 Regulome Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing, Plant Physiology
www.ncbi.nlm.nih.gov/pubmed/19465578
Plant & Animal
2009 Genome Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris, Microbial Cell Factories
www.ncbi.nlm.nih.gov/pubmed/19490607
Plant & Animal
2009 Genome Genome diversity of Pseudomonas aeruginosa PAO1 laboratory strains, Microbial Cell Factories
www.ncbi.nlm.nih.gov/pubmed/20023018
Microorganism
2009 Transcriptome A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/20398411
Microorganism
2008 Genome Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats, BMC Genomics
www.ncbi.nlm.nih.gov/pubmed/18976483
Plant & Animal
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