Alignment / mapping

Alignments against known reference sequences

 

We also carry our alignments of your sequencing data with respect to known reference sequences. The focus here is frequently on the discovery of polymorphisms and structural variations. The results of the alignment of so-called re-sequencing projects are supplied in various file formats - in text format, but also in ace and gff format for a possible visualization. For additional variation analyses we use proprietary bioinformatics tools. You will receive the results of these analyses in txt or xls format.

Method File format
Alignment /Mapping fasta & qual und ace / gff
SNP Analyse gff & xls
InDel Tabelle txt / xls

Contig Scaffolding using Illumina reads

 

 

 

Spotlight

Customer Service

 

(D)   +49 - 7531 81 60 68 

(F)    +33 - 4 91 82 84 88 

(GB) +44 - 207 691 4921 

(S)   +46 - 8 655 3609

 

Opening hours:
8 am - 6 pm CET (Mon-Fri)

 

customerservice@gatc-biotech.com

Useful Links

 

Roche GS De Novo Assembler (454 Life Science / Roche)
MIRA (Mimicking Intelligent Read Assembly, Bastien Chevreux)
Velvet (EMBL-EBI, Cambridge, UK)
Edena (Exact De Novo Assembler)
ELAND (Efficient Large-Scale Alignment of Nucleotide Databases)
Mosaik (Reference guided aligner/assembler)
MAQ (Mapping and Assembly with Qualities)
SOAP (Short Oligonucleotide Alignment Program)

 

More software for Next Generation sequencing...

 

 

 

 

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