BLAST (Basic Local Alignment Search Tool)

In GenBank, GenPep and customer-specific databases

 

BLAST analyses (Basic Local Alignment Search Tool) are carried out after clustering or the de novo assembly for individual clusters or contigs. The result is a list of all those sequences which exhibit similarities with the starting sequence. We use various databases, depending on the objectives, e.g. GenBank, GenPep or customer-specific databases. The BLAST analysis is supplied in tabular form in the xls and txt file format.

Association of cluster representative sequences with genetic information

Association of cluster representative sequences with genetic information
 

 

 

Spotlight

Customer Service

 

(D)   +49 - 7531 81 60 68 

(F)    +33 - 4 91 82 84 88 

(GB) +44 - 207 691 4921 

(S)   +46 - 8 655 3609

 

Opening hours:
8 am - 6 pm CET (Mon-Fri)

 

customerservice@gatc-biotech.com

Useful Links

 

Roche GS De Novo Assembler (454 Life Science / Roche)
MIRA (Mimicking Intelligent Read Assembly, Bastien Chevreux)
Velvet (EMBL-EBI, Cambridge, UK)
Edena (Exact De Novo Assembler)
ELAND (Efficient Large-Scale Alignment of Nucleotide Databases)
Mosaik (Reference guided aligner/assembler)
MAQ (Mapping and Assembly with Qualities)
SOAP (Short Oligonucleotide Alignment Program)

 

More software for Next Generation sequencing...

 

 

 

 

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