De novo assembly / Hybrid assembly

Project-specific combination of different tools 

 

GATC makes it possible to combine the advantage of individual sequencing technologies to best effect. Various bioinformatics tools are used for the assembly and the alignment, and intelligently linked up to form project-specific pipelines. We especially take care to specifically select the tools according to the genomic characteristics of the genome to be sequenced so that an informative analysis result is guaranteed.

Method File format
de novo Assemblierung (Contigs) fasta & qual und ace
Hybrid Assemblierung fasta & qual und ace

Detection of incorrectly called homopolymers by use of Illumina reads

 

 

 

 

Spotlight

Customer Service

 

(D)   +49 - 7531 81 60 68 

(F)    +33 - 4 91 82 84 88 

(GB) +44 - 207 691 4921 

(S)   +46 - 8 655 3609

 

Opening hours:
8 am - 6 pm CET (Mon-Fri)

 

customerservice@gatc-biotech.com

Useful Links

 

Roche GS De Novo Assembler (454 Life Science / Roche)
MIRA (Mimicking Intelligent Read Assembly, Bastien Chevreux)
Velvet (EMBL-EBI, Cambridge, UK)
Edena (Exact De Novo Assembler)
ELAND (Efficient Large-Scale Alignment of Nucleotide Databases)
Mosaik (Reference guided aligner/assembler)
MAQ (Mapping and Assembly with Qualities)
SOAP (Short Oligonucleotide Alignment Program)

 

More software for Next Generation sequencing...

 

 

 

 

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