
GATC makes it possible to combine the advantage of individual sequencing technologies to best effect. Various bioinformatics tools are used for the assembly and the alignment, and intelligently linked up to form project-specific pipelines. We especially take care to specifically select the tools according to the genomic characteristics of the genome to be sequenced so that an informative analysis result is guaranteed.
| Method | File format |
|---|---|
| de novo Assemblierung (Contigs) | fasta & qual und ace |
| Hybrid Assemblierung | fasta & qual und ace |
(D) +49 - 7531 81 60 68
(F) +33 - 4 91 82 84 88
(GB) +44 - 207 691 4921
(S) +46 - 8 655 3609
Opening hours:
8 am - 6 pm CET (Mon-Fri)
Roche GS De Novo Assembler (454 Life Science / Roche)
MIRA (Mimicking Intelligent Read Assembly, Bastien Chevreux)
Velvet (EMBL-EBI, Cambridge, UK)
Edena (Exact De Novo Assembler)
ELAND (Efficient Large-Scale Alignment of Nucleotide Databases)
Mosaik (Reference guided aligner/assembler)
MAQ (Mapping and Assembly with Qualities)
SOAP (Short Oligonucleotide Alignment Program)
More software for Next Generation sequencing...