Data annotation
Automatic gene prediction, manual gene annotation ...
The annotation carried out by GATC includes automatic gene predictions, automatic functional annotation, manual verification of gene models, manual annotation of genes, manual functional classification (GO), EC number assignment etc., the exact details depending on the individual objective.
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Useful Links
Roche GS De Novo Assembler (454 Life Science / Roche)
MIRA (Mimicking Intelligent Read Assembly, Bastien Chevreux)
Velvet (EMBL-EBI, Cambridge, UK)
Edena (Exact De Novo Assembler)
ELAND (Efficient Large-Scale Alignment of Nucleotide Databases)
Mosaik (Reference guided aligner/assembler)
MAQ (Mapping and Assembly with Qualities)
SOAP (Short Oligonucleotide Alignment Program)
More software for Next Generation sequencing...
